PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462956801
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 248aa    MW: 27645.8 Da    PI: 10.7859
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462956801genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.21.5e-3235132190
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed  g++W+++++y+++s++yvltkGW++Fv+++gL++gD++vF+++    e+
  462956801  35 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSHSTYgPEK 132
                89*******************************5556799**************************************************87554444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-4030146IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-3033126No hitNo description
SuperFamilySSF1019366.02E-3233139IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.4835142IPR003340B3 DNA binding domain
PfamPF023627.3E-2935127IPR003340B3 DNA binding domain
SMARTSM010193.1E-2435141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MRRTRALVPL QTPSRGHHSL ASPPSPAAVA REHLFDKTVT PSDVGKLNRL VIPKQHAEKH  60
FPLQLPSAGG ESKGVLLNFE DAAGKVWRFR YSYWNSSQSY VLTKGWSRFV REKGLRAGDT  120
IVFSHSTYGP EKQLFIDCKK SKSTPTTEAA PSPSPMEKPK EARVVVRLFG VDIAGDGCQK  180
RGRPLEVALE QGQQFFKKQC MAQHHTPALG ALLLSKNQQA IDMLKSPWSR RSMEAIRTFL  240
QESRVTAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-523215211128DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0174621e-113BT017462.1 Zea mays clone EL01N0407E07.c mRNA sequence.
GenBankEU9695191e-113EU969519.1 Zea mays clone 331400 DNA-binding protein RAV1 mRNA, complete cds.
GenBankKJ7278701e-113KJ727870.1 Zea mays clone pUT5962 AP2-EREBP transcription factor (EREB126) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968155.11e-96PREDICTED: AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ0DXB13e-79Y2641_ORYSJ; B3 domain-containing protein Os02g0764100
SwissprotQ8RZX91e-77Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A0A9IZP53e-97A0A0A9IZP5_ARUDO; Uncharacterized protein
TrEMBLK3XJ361e-96K3XJ36_SETIT; Uncharacterized protein
STRINGSi001909m3e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-56related to ABI3/VP1 2